SNP Report

Basic Info
Name |
rs4842318
dbSNP
Ensembl
|
Location |
chr12:79650387 - 79650387(1) |
Variant Alleles |
C/T |
Ancestral Allele |
C |
Minor Allele |
T |
Minor Allele Frequence |
0.403954 |
Functional Annotation |
intron_variant; non_coding_transcript_variant.
|
Consequence to Transcript |
intron_variant(ENST00000328827, ENST00000550006, ENST00000551712); non_coding_transcript_variant(ENST00000550006) |
No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
YES
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 3)

rs_ID |
Literature-origin SNPs with LD |
Functional Annotation |
r2[population] |
rs4842266
|
|
upstream_gene_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]
|
rs12827748
|
|
intron_variant; non_coding_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]
|
rs4842316
|
|
downstream_gene_variant; intron_variant; non_coding_transcript_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]
|

Overlap with SZ from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Kishi, T., 2008 (a) |
Hardy-Weinberg equilibrium P value=0.388, genotypic P value=0.822, allelic P value=0.161 for schizophrenia compared with controls. |
No association was detected with schizophrenia or MDD in allele/genotype-wise analyses. |
Negative |

Overlap with MDD from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Kishi, T., 2008 (a) |
Hardy-Weinberg equilibrium P value=0.897, genotypic P value=0.726, allelic P value=0.439 for MDD compared with controls. |
No association was detected with schizophrenia or MDD in allele/genotype-wise analyses. |
Negative
|