BDgene

SNP Report

Basic Info
Name rs4806874 dbSNP Ensembl
Location chr19:2738354 - 2738354(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.460663
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000269740, ENST00000455372, ENST00000545664, ENST00000586572, ENST00000589166, ENST00000589363, ENST00000590875); non_coding_transcript_variant(ENST00000590875)
No. of Studies 2 (Positive: 0; Negative: 1; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 A/G FBAT: P-value = 0.034354 FBAT: P-value = 0.034354 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (b) G Random effects P-value = 5E-06; DerSimonian-Laird (random e...... Random effects P-value = 5E-06; DerSimonian-Laird (random effects) OR (95% CI)=1.20 (1.12-1.29) More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC39A3 solute carrier family 39 (zinc transporter), member 3 19p13.3 1(0/1/0)

SNPs in LD with rs4806874 (count: 6) View in gBrowse (chr19:2726201..2748599 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016