SNP Report

Basic Info

Name	rs4806874 dbSNP Ensembl
Location	chr19:2738354 - 2738354(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.460663
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000269740, ENST00000455372, ENST00000545664, ENST00000586572, ENST00000589166, ENST00000589363, ENST00000590875); non_coding_transcript_variant(ENST00000590875)
No. of Studies	2 (Positive: 0; Negative: 1; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ollila, H. M.,2009	A/G		FBAT: P-value = 0.034354 FBAT: P-value = 0.034354	No significant association was observed No significant association was observed	Negative
Baum, A. E., 2008 (b)		G	Random effects P-value = 5E-06; DerSimonian-Laird (random e...... Random effects P-value = 5E-06; DerSimonian-Laird (random effects) OR (95% CI)=1.20 (1.12-1.29) More...		Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC39A3	solute carrier family 39 (zinc transporter), member 3	19p13.3	1(0/1/0)

SNPs in LD with rs4806874 (count: 6) View in gBrowse (chr19:2726201..2748599 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7252598		0.953[CEU]; 0.975[TSI]
rs10409851	downstream_gene_variant; intron_variant; upstream_gene_variant	0.817[CEU]
rs2302490	upstream_gene_variant	1.0[CEU]; 0.975[TSI]
rs10407667	downstream_gene_variant; intron_variant; upstream_gene_variant	0.949[CEU]
rs759071	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.908[CEU]
rs10415622	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)