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SNP Report
Basic Info
| Name | rs4668331 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr2:170849737 - 170849737(1) | ||
| Variant Alleles | A/T | ||
| Ancestral Allele | A | ||
| Minor Allele | T | ||
| Minor Allele Frequence | 0.221446 | ||
| Functional Annotation | downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant. | ||
| Consequence to Transcript | downstream_gene_variant(ENST00000462739); intron_variant(ENST00000358196, ENST00000414527, ENST00000488724, ENST00000493875, ENST00000625689); NMD_transcript_variant(ENST00000414527, ENST00000493875); non_coding_transcript_variant(ENST00000488724); upstream_gene_variant(ENST00000478562) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| GAD1 | glutamate decarboxylase 1 (brain, 67kDa) | 2q31 | 2(1/1/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 10)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Lundorf, M. D.,2005 | Fisher's exact test:for SZ, in Scottish sample set, P-value(allele)=1, P-value(genotype)=0.92 | No significant association was observed. | Negative |
Overlap with MDD from cross-disorder studies (count: 0)