BDgene

SNP Report

Basic Info
Name rs4668059 dbSNP Ensembl
Location chr2:168309772 - 168309772(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.15016
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P.,2011 C/T Primary GWAS P-value(GC)=0.0000445, OR=1.18; replication P-v...... Primary GWAS P-value(GC)=0.0000445, OR=1.18; replication P-value(1-sided)=0.158, OR=1.04; Combined GWAS and replication P-value(GC)=0.000132, OR=1.12 More... No significant association was observed. No significant association was observed. Negative
Green, E. K.,2012 C/T BD ImmunoChip:P-value = 0.731,OR = 1.026;ImmunoChip, PGC-BD ...... BD ImmunoChip:P-value = 0.731,OR = 1.026;ImmunoChip, PGC-BD combined data:P-balue = 0.00023,OR = 1.107 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
STK39 serine threonine kinase 39 2q24.3 2(0/2/0)

SNPs in LD with rs4668059 (count: 1) View in gBrowse (chr2:168286525..168309772 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016