BDgene

SNP Report

Basic Info
Name rs3821298 dbSNP Ensembl
Location chr2:159430008 - 159430008(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.243011
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000343439, ENST00000392782, ENST00000392783, ENST00000441143, ENST00000472953); non_coding_transcript_variant(ENST00000472953)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 G/T P(unadj)-value=2.30E-05, OR (unadj)=1.327, P(adj)-value=8....... P(unadj)-value=2.30E-05, OR (unadj)=1.327, P(adj)-value=8.90E-05, OR (adj)=1.309 More... Top 68 SNPs (showing suggestive association to BD: p<0.0001)...... Top 68 SNPs (showing suggestive association to BD: p<0.0001) in our combined (CAMH and IoP) GWAS. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BAZ2B bromodomain adjacent to zinc finger domain, 2B 2q24.2 1(0/1/0)

SNPs in LD with rs3821298 (count: 30) View in gBrowse (chr2:159355060..159459636 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016