SNP Report

Basic Info

Name	rs3821298 dbSNP Ensembl
Location	chr2:159430008 - 159430008(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.243011
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000343439, ENST00000392782, ENST00000392783, ENST00000441143, ENST00000472953); non_coding_transcript_variant(ENST00000472953)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	G/T		P(unadj)-value=2.30E-05,Â OR (unadj)=1.327,Â P(adj)-value=8....... P(unadj)-value=2.30E-05,Â OR (unadj)=1.327,Â P(adj)-value=8.90E-05,Â OR (adj)=1.309 More...	Top 68 SNPs (showing suggestive association to BD: p<0.0001)...... Top 68 SNPs (showing suggestive association to BD: p<0.0001) in our combined (CAMH and IoP) GWAS. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BAZ2B	bromodomain adjacent to zinc finger domain, 2B	2q24.2	1(0/1/0)

SNPs in LD with rs3821298 (count: 30) View in gBrowse (chr2:159355060..159459636 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)

rs_ID	Functional Annotation	r²[population]
rs3771716	intron_variant; non_coding_transcript_variant	0.923[CEU]
rs741	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	0.956[CEU]; 0.933[TSI]
rs12624147	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs13033860	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs13022220	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.977[TSI]
rs7583758	intron_variant	0.887[CEU]
rs1549115	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs4664286	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.925[CEU]; 0.828[TSI]
rs2193924	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs17495453	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs13028985	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.925[CEU]; 0.828[TSI]
rs12473781	intron_variant; non_coding_transcript_variant	0.92[CEU]
rs1023603	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.925[CEU]; 0.91[TSI]
rs12474624	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.957[CEU]
rs12988312	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.955[TSI]
rs12473369	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CEU]
rs12988336	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs12995487	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.887[TSI]
rs12470533	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs3771712	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	0.961[CEU]; 0.885[TSI]
rs2193923	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.878[CEU]
rs2302927	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 0.887[TSI]
rs17423523	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs2193922	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs13026780	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.977[TSI]
rs3755437	intron_variant; non_coding_transcript_variant	0.923[CEU]; 0.822[TSI]
rs1346013	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.852[CEU]
rs3755436	intron_variant; non_coding_transcript_variant	0.883[CEU]; 0.828[TSI]
rs3771717	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.922[CEU]
rs12470244	intron_variant; non_coding_transcript_variant	0.925[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)