BDgene

SNP Report

Basic Info
Name rs3818275 dbSNP Ensembl
Location chr11:35287236 - 35287236(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.395966
Functional Annotation downstream_gene_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000532760); intron_variant(ENST00000278379, ENST00000395750, ENST00000395753, ENST00000531628, ENST00000606205); upstream_gene_variant(ENST00000479543)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G G Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0325, Gene-wide P-value = 0.3556 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC1A2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 11p13-p12 1(1/0/0)

SNPs in LD with rs3818275 (count: 9) View in gBrowse (chr11:35242508..35301653 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)