BDgene

SNP Report

Basic Info
Name rs3818253 dbSNP Ensembl
Location chr20:35009073 - 35009073(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.179912
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000252015, ENST00000451813)
No. of Studies 2 (Positive: 1; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Green, E. K.,2012 A/G BD ImmunoChip:P-value = 0.00000265,OR = 1.333;ImmunoChip, PG...... BD ImmunoChip:P-value = 0.00000265,OR = 1.333;ImmunoChip, PGC-BD combined data:P-balue = 0.0000000388,OR = 1.164 More... The SNP showed a significant association with BD. The SNP showed a significant association with BD. Positive
Forstner, A. J., 2015 P-value=6.58E-7 P-value=6.58E-7 After correction for multiple testing, nine miRNAs showed a ...... After correction for multiple testing, nine miRNAs showed a significant association with BD. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein 20q11.23 1(1/0/0)

SNPs in LD with rs3818253 (count: 23) View in gBrowse (chr20:34957252..35115804 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 23)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016