BDgene

SNP Report

Basic Info
Name rs3793663 dbSNP Ensembl
Location chr10:73500425 - 73500425(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.132388
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000422977, ENST00000439792, ENST00000464635, ENST00000600887, ENST00000620302, ENST00000620432, ENST00000620559); intron_variant(ENST00000339859, ENST00000418501, ENST00000422491, ENST00000424265, ENST00000442133, ENST00000466048, ENST00000497106, ENST00000593790, ENST00000595069, ENST00000595935, ENST00000596320, ENST00000597958, ENST00000600206, ENST00000600607, ENST00000610317); NMD_transcript_variant(ENST00000418501, ENST00000424265, ENST00000466048); non_coding_transcript_variant(ENST00000442133, ENST00000497106, ENST00000593790, ENST00000595069, ENST00000595935, ENST00000596320, ENST00000597958, ENST00000600206, ENST00000600607, ENST00000610317); upstream_gene_variant(ENST00000342558, ENST00000360663, ENST00000394828, ENST00000394829)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Forero, D. A., 2016 Nominal P-value=0.03831, Permutation P-value=0.0396, OR=0.44...... Nominal P-value=0.03831, Permutation P-value=0.0396, OR=0.4432, 95%CI=0.2012-0.9764 More... rs3793663 is significantly associated with BP type II rs3793663 is significantly associated with BP type II Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
USP54 ubiquitin specific peptidase 54 10q22.3 Mapped by Literature SNP
PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme 10q22.2 2(1/1/0)

SNPs in LD with rs3793663 (count: 81) View in gBrowse (chr10:73302846..73631459 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 81)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016