SNP Report

Basic Info
Name |
rs3766512
dbSNP
Ensembl
|
Location |
chr1:147625834 - 147625834(1) |
Variant Alleles |
T/C |
Ancestral Allele |
T |
Minor Allele |
C |
Minor Allele Frequence |
0.180911 |
Functional Annotation |
3_prime_UTR_variant; downstream_gene_variant.
|
Consequence to Transcript |
3_prime_UTR_variant(ENST00000234739); downstream_gene_variant(ENST00000609196) |
No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
YES
|

SNP related studies (count: 1)

SNP related genes (count: 2)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 24)

rs_ID |
Literature-origin SNPs with LD |
Functional Annotation |
r2[population] |
rs3820127
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.896[CHB]; 0.809[CHD]
|
rs11240100
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.896[CHB]; 0.809[CHD]
|
rs7539714
|
|
downstream_gene_variant; intron_variant |
0.849[CHB]
|
rs3766510
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.896[CHB]; 0.828[CHD]
|
rs6681587
|
|
intron_variant |
0.933[CHB]
|
rs3766507
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.844[CHB]
|
rs11240098
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.886[CHB]
|
rs12045199
|
|
3_prime_UTR_variant; downstream_gene_variant; intron_variant |
0.889[CHB]; 0.827[JPT]
|
rs12025871
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.896[CHB]; 0.809[CHD]
|
rs6667707
|
|
downstream_gene_variant |
0.849[CHB]
|
rs12045709
|
|
downstream_gene_variant; intron_variant |
1.0[CHB]
|
rs3766506
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.843[CHB]
|
rs10793694
|
|
downstream_gene_variant; intron_variant |
1.0[CHB]
|
rs3820126
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant |
0.843[CHB]
|
rs1578723
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.896[CHB]; 0.809[CHD]
|
rs1417279
|
|
intron_variant |
1.0[CHB]; 0.953[CHD]
|
rs2297961
|
|
3_prime_UTR_variant; downstream_gene_variant |
0.898[CHB]; 0.951[CHD]
|
rs6677434
|
|
intron_variant |
1.0[CHB]
|
rs870434
|
|
downstream_gene_variant; intron_variant |
1.0[CHB]; 0.953[CHD]
|
rs3818888
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.896[CHB]
|
rs11240102
|
|
intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant |
0.882[CHB]
|
rs867270
|
|
3_prime_UTR_variant; downstream_gene_variant |
0.844[CHB]; 0.951[CHD]
|
rs10157759
|
|
intron_variant |
1.0[CHB]
|
rs6663082
|
|
intron_variant |
1.0[CHB]
|

Overlap with SZ from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Li, J.,2011(b) |
Third-Stage Sample:for SZ, allele association P-value = 0.23, OR(95%CI)=1.08(0.95-1.22);Combined Third-Stage Sample, allele association P-value = 0.01, OR(98%CI)=1.08(1.02-1.15) |
Significant association was observed in SZ. |
Positive |

Overlap with MDD from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Li, J.,2011(b) |
Third-Stage Sample:for MDD, allele association P-value = 0.13, OR(95%CI)=1.10(0.97-1.24) |
No significant association was observed. |
Negative
|