SNP Report

Basic Info

Name	rs334538 dbSNP Ensembl
Location	chr3:120106364 - 120106364(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.193291
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000469864); intron_variant(ENST00000484076); non_coding_transcript_variant(ENST00000484076)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Saus, E.,2010	G/A		association analyses with diagnosis: codominant P-value = 0....... association analyses with diagnosis: codominant P-value = 0.587, dominant P-value = 0.5, recessive P-value = 0.35, additive P-value = 0.369 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GSK3B	glycogen synthase kinase 3 beta	3q13.3	8(0/8/0)
RN7SL762P	RNA, 7SL, cytoplasmic 762, pseudogene	3q13.33	Mapped by Literature SNP

SNPs in LD with rs334538 (count: 0) View in gBrowse (chr3:120106364..120106364 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Saus, E.,2010	association analyses with diagnosis:codominant P-value = 0.992, dominant P-value = 0.907, recessive P-value = 0.946, additive P-value = 0.902	No significant association was observed.	Negative