SNP Report

Basic Info
Name |
rs3131296
dbSNP
Ensembl
|
Location |
chrCHR_HSCHR6_MHC_SSTO_CTG1:32212897 - 32212897(1) |
Variant Alleles |
C/T |
Ancestral Allele |
C |
Minor Allele |
T |
Minor Allele Frequence |
0.0784744 |
Functional Annotation |
intron_variant; upstream_gene_variant.
|
Consequence to Transcript |
intron_variant(ENST00000375023); upstream_gene_variant(ENST00000474612, ENST00000425600, ENST00000466682, ENST00000437843, ENST00000485109, ENST00000454571, ENST00000471956, ENST00000439349, ENST00000465833, ENST00000383264, ENST00000476219, ENST00000457094, ENST00000495284) |
No. of Studies |
2 (Positive: 1; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
NO
|

SNP related studies (count: 2)

SNP related genes (count: 1)

Overlap with SZ from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Steinberg, S.,2012 |
Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.15 (1.08, 1.21),P-value = 1.4 x 10-6 |
Suggestive association was found. |
Trend |

Overlap with MDD from cross-disorder studies (count: 0)