BDgene

SNP Report

Basic Info
Name rs3011267 dbSNP Ensembl
Location chr9:133005806 - 133005806(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.21266
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Bergen, S. E.,2012 A logistic regression: OR=1.41, P-value = 9.82E-06 logistic regression: OR=1.41, P-value = 9.82E-06 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa 9q34.13 1(0/1/0)
GFI1B growth factor independent 1B transcription repressor 9q34.13 1(0/1/0)

SNPs in LD with rs3011267 (count: 1) View in gBrowse (chr9:133005806..133022500 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Bergen, S. E.,2012 logistic regression:P-value > E-05 No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 0)