SNP Report

Basic Info
Name rs2983521 dbSNP Ensembl
Location chr6:165643715 - 165643715(1)
Variant Alleles A/T
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.132788
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000366882, ENST00000539869, ENST00000580695); non_coding_transcript_variant(ENST00000580695)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
McDonald, M. L.,2012 chi square test:OR(95%CI) = 1.3(1.1–1.5),P-value = 0.00009...... chi square test:OR(95%CI) = 1.3(1.1–1.5),P-value = 0.000093 for BD-I More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PDE10A phosphodiesterase 10A 6q26 1(0/1/0)

SNPs in LD with rs2983521 (count: 2) View in gBrowse (chr6:165638020..165647113 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)