SNP Report

Basic Info

Name	rs2926837 dbSNP Ensembl
Location	chr5:153792240 - 153792240(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.194489
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000285900, ENST00000340592, ENST00000448073, ENST00000518142, ENST00000518783, ENST00000521843)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2008 (b)	C/G	C	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0294, Gene-wide P-value = 0.3127 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRIA1	glutamate receptor, ionotropic, AMPA 1	5q33	2(2/0/0)

SNPs in LD with rs2926837 (count: 14) View in gBrowse (chr5:153714438..153871259 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2964011		0.959[CEU]
rs4502882	intron_variant	0.802[CEU]
rs2964025	intron_variant	1.0[CEU]
rs1461226	intron_variant	1.0[CEU]
rs2964013	downstream_gene_variant	0.959[CEU]
rs2926864		0.961[CEU]
rs2964007		0.821[CEU]
rs4469245		0.961[CEU]
rs2926830		0.803[CEU]
rs6580040	intron_variant	0.889[CEU]
rs2964010		0.958[CEU]
rs2964028		0.922[CEU]
rs2964012		0.959[CEU]
rs2926858		0.801[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)