BDgene

SNP Report

Basic Info
Name rs2926835 dbSNP Ensembl
Location chr5:153809370 - 153809370(1)
Variant Alleles T/A
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.407149
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000285900, ENST00000340592, ENST00000448073, ENST00000518142, ENST00000518783, ENST00000521843)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/T T Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0036, Gene-wide P-value = 0.029 (P values were based on permutation for all SNPs in each gene). More... rs2926835 in the GRIA1 gene reached gene-wide association. N...... rs2926835 in the GRIA1 gene reached gene-wide association. None of these associations survived multiple testing for its own system (e.g., glutamatergic or serotoninergic) or all the five systems taken together. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIA1 glutamate receptor, ionotropic, AMPA 1 5q33 2(2/0/0)

SNPs in LD with rs2926835 (count: 18) View in gBrowse (chr5:153785804..153876183 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016