BDgene

SNP Report

Basic Info
Name rs2905072 dbSNP Ensembl
Location chr9:132969648 - 132969648(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.211062
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000339463, LRG_879t1)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 A/G NIMH/Pritzker: OR (95% CI)=1.43(1.20-1.70), P-value = 0.0000...... NIMH/Pritzker: OR (95% CI)=1.43(1.20-1.70), P-value = 0.000058; GSK(reduced sample): OR (95% CI)=1.14(0.95-1.38), P-value = 0.16; WTCCC: OR (95% CI)=1.16(1.05-1.28), P-value = 0.0043; 3-study meta-analysis: OR (95% CI)=1.21(1.11-1.32), P-value = 0.0000064; Heterogeneity: I2%=56, P-value = 0.1 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GFI1B growth factor independent 1B transcription repressor 9q34.13 1(0/1/0)

SNPs in LD with rs2905072 (count: 1) View in gBrowse (chr9:132969648..132970228 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016