SNP Report

Basic Info

Name	rs2899664 dbSNP Ensembl
Location	chr15:60908551 - 60908551(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.347045
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000335670, ENST00000551975, ENST00000557822, ENST00000559145, ENST00000561093); NMD_transcript_variant(ENST00000551975); non_coding_transcript_variant(ENST00000557822, ENST00000559145, ENST00000561093)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lai, Y. C., 2015			Empirical P-value=0.016, OR=1.25 Empirical P-value=0.016, OR=1.25	One of 45 SNPs showed associations with BD. One of 45 SNPs showed associations with BD.	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RORA	RAR-related orphan receptor A	15q21-q22	3(2/1/0)

SNPs in LD with rs2899664 (count: 0) View in gBrowse (chr15:60908551..60908551 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)