SNP Report

Basic Info

Name	rs2896635 dbSNP Ensembl
Location	chr11:13338198 - 13338198(1)
Variant Alleles	T/A
Ancestral Allele	A
Minor Allele	T
Minor Allele Frequence	0.382188
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403510, ENST00000480685, ENST00000482049, ENST00000527998, ENST00000529050, ENST00000529388, ENST00000529825, ENST00000530357, ENST00000531665, ENST00000533520, ENST00000534544); non_coding_transcript_variant(ENST00000480685)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mansour, H. A., 2006	A/T		TDT P-value = 0.235 in the samples combined, Pittsburgh Tren...... TDT P-value = 0.235 in the samples combined, Pittsburgh Trends test=0.162 for BDI More...	The loci tested did not show significant differences between...... The loci tested did not show significant differences between sites in the transmission rate. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARNTL	aryl hydrocarbon receptor nuclear translocator-like	11p15	7(5/2/0)

SNPs in LD with rs2896635 (count: 2) View in gBrowse (chr11:13335636..13339977 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10832027		intron_variant; non_coding_transcript_variant	1.0[CEU]
rs6486122		intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Mansour, H. A., 2006	TDT P-value = 0.933, Trends test=0.772 for Pittsburgh SZ/SZA		Negative

Overlap with MDD from cross-disorder studies (count: 0)