SNP Report

Basic Info

Name	rs2885470 dbSNP Ensembl
Location	chr3:197748569 - 197748569(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.263379
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000273582, ENST00000428738, ENST00000467303, ENST00000472149); non_coding_transcript_variant(ENST00000467303, ENST00000472149); upstream_gene_variant(ENST00000241502, ENST00000412924, ENST00000415708, ENST00000418169, ENST00000424384, ENST00000426031, ENST00000494309)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Schosser, A.,2011			chi-square (X²) test: genotype, X²=2.6...... chi-square (X²) test: genotype, X²=2.698, P-value = 0.259; allele, X²=0.02, P-value = 0.893 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FYTTD1	forty-two-three domain containing 1	3q29	1(0/1/0)
KIAA0226	KIAA0226	3q29	Mapped by Literature SNP

SNPs in LD with rs2885470 (count: 6) View in gBrowse (chr3:197742767..197819212 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6787318	intron_variant; non_coding_transcript_variant	0.866[CEU]; 0.957[TSI]
rs3205525	3_prime_UTR_variant; missense_variant; NMD_transcript_variant	0.911[TSI]
rs660325	intron_variant; NMD_transcript_variant; upstream_gene_variant	0.826[TSI]
rs538885	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.871[TSI]
rs1398792	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs2087605	intron_variant; NMD_transcript_variant	0.823[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)