BDgene

SNP Report

Basic Info
Name rs2885470 dbSNP Ensembl
Location chr3:197748569 - 197748569(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.263379
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000273582, ENST00000428738, ENST00000467303, ENST00000472149); non_coding_transcript_variant(ENST00000467303, ENST00000472149); upstream_gene_variant(ENST00000241502, ENST00000412924, ENST00000415708, ENST00000418169, ENST00000424384, ENST00000426031, ENST00000494309)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Schosser, A.,2011 chi-square (X2) test: genotype, X2=2.6...... chi-square (X2) test: genotype, X2=2.698, P-value = 0.259; allele, X2=0.02, P-value = 0.893 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FYTTD1 forty-two-three domain containing 1 3q29 1(0/1/0)
KIAA0226 KIAA0226 3q29 Mapped by Literature SNP

SNPs in LD with rs2885470 (count: 6) View in gBrowse (chr3:197742767..197819212 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)