SNP Report

Basic Info

Name	rs2854248 dbSNP Ensembl
Location	chr1:160124137 - 160124137(1)
Variant Alleles	T/A
Ancestral Allele	T
Minor Allele	A
Minor Allele Frequence	0.407149
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000478587); intron_variant(ENST00000361216, ENST00000392233, ENST00000468587, ENST00000472488, LRG_6t1); non_coding_transcript_variant(ENST00000468587, ENST00000472488); upstream_gene_variant(ENST00000447527)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Goldstein, I.,2009	A/T		Single SNP association: dominant model: FBAT P-value = 0.011...... Single SNP association: dominant model: FBAT P-value = 0.0110; recessive model: FBAT P-value = 0.0110; heterozygote model: FBAT P-value = 0.0031 More...	The SNP was significantly associated with BD in several mode...... The SNP was significantly associated with BD in several modes. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ATP1A2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	1q23.2	1(1/0/0)
ATP1A1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	1p13	1(1/0/0)

SNPs in LD with rs2854248 (count: 0) View in gBrowse (chr1:160124137..160124137 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)