SNP Report

Basic Info

Name	rs28505970 dbSNP Ensembl
Location	chr2:1173095 - 1173095(1)
Variant Alleles	C/A
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.20627
Functional Annotation	intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant. Polyphen Annotation: probably damaging(ENST00000308624) SIFT Annotation: deleterious(ENST00000308624)
Consequence to Transcript	intron_variant(ENST00000407292); missense_variant(ENST00000308624); non_coding_transcript_exon_variant(ENST00000463442, ENST00000467759, ENST00000475201, ENST00000494178); non_coding_transcript_variant(ENST00000463442, ENST00000467759, ENST00000475201, ENST00000494178)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Georgi, B., 2014	C/A		GERP=4.58 GERP=4.58	Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SNTG2	syntrophin, gamma 2	2p25	1(0/0/1)

SNPs in LD with rs28505970 (count: 0) View in gBrowse (chr2:1173095..1173095 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)