SNP Report

Basic Info
Name rs28505970 dbSNP Ensembl
Location chr2:1173095 - 1173095(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.20627
Functional Annotation intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Polyphen Annotation: probably damaging(ENST00000308624)
SIFT Annotation: deleterious(ENST00000308624)
Consequence to Transcript intron_variant(ENST00000407292); missense_variant(ENST00000308624); non_coding_transcript_exon_variant(ENST00000463442, ENST00000467759, ENST00000475201, ENST00000494178); non_coding_transcript_variant(ENST00000463442, ENST00000467759, ENST00000475201, ENST00000494178)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Georgi, B., 2014 C/A GERP=4.58 GERP=4.58 Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SNTG2 syntrophin, gamma 2 2p25 1(0/0/1)

SNPs in LD with rs28505970 (count: 0) View in gBrowse (chr2:1173095..1173095 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)