SNP Report

Basic Info

Name	rs2842030 dbSNP Ensembl
Location	chr1:163070705 - 163070705(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.469848
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000367908, ENST00000367909, ENST00000421743, ENST00000491263, ENST00000527393, ENST00000527809, ENST00000531057); non_coding_transcript_exon_variant(ENST00000533019); non_coding_transcript_variant(ENST00000491263, ENST00000527393, ENST00000533019); upstream_gene_variant(ENST00000367906, ENST00000528938)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Li, Y.,2010	G/T		Allele association: P-value = 0.17, OR(95%CI)=0.860962(0.695...... Allele association: P-value = 0.17, OR(95%CI)=0.860962(0.695003-1.066551) More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RGS4	regulator of G-protein signaling 4	1q23.3	6(3/2/1)

SNPs in LD with rs2842030 (count: 3) View in gBrowse (chr1:163065741..163070705 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs10917671	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.906[CHB]; 0.953[JPT]
rs7515900	5_prime_UTR_variant; upstream_gene_variant	0.906[CHB]; 0.953[JPT]
rs2842028	upstream_gene_variant	0.81[CHB]; 0.822[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)