SNP Report

Basic Info
Name rs2842030 dbSNP Ensembl
Location chr1:163070705 - 163070705(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.469848
Functional Annotation intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000367908, ENST00000367909, ENST00000421743, ENST00000491263, ENST00000527393, ENST00000527809, ENST00000531057); non_coding_transcript_exon_variant(ENST00000533019); non_coding_transcript_variant(ENST00000491263, ENST00000527393, ENST00000533019); upstream_gene_variant(ENST00000367906, ENST00000528938)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, Y.,2010 G/T Allele association: P-value = 0.17, OR(95%CI)=0.860962(0.695...... Allele association: P-value = 0.17, OR(95%CI)=0.860962(0.695003-1.066551) More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RGS4 regulator of G-protein signaling 4 1q23.3 6(3/2/1)

SNPs in LD with rs2842030 (count: 3) View in gBrowse (chr1:163065741..163070705 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)