BDgene

SNP Report

Basic Info
Name rs2813164 dbSNP Ensembl
Location chrCHR_HSCHR1_3_CTG31:198452278 - 198452278(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.266573
No. of Studies 2 (Positive: 0; Negative: 1; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/A NIMH/Pritzker: OR (95% CI)=1.39(1.19-1.62), P-value = 0.0000...... NIMH/Pritzker: OR (95% CI)=1.39(1.19-1.62), P-value = 0.000021; GSK(complete sample): OR (95% CI)=1.24(1.07-1.44), P-value = 0.0048; 2-study meta-analysis: OR (95% CI)=1.31(1.18-1.46), P-value = 0.00000083; Heterogeneity: I2%=9, P-value = 0.3 More... Trend
Xu, W., 2014 C/T P(unadj)-value=3.75E-04, OR (unadj)=1.295, P(adj)-value=5....... P(unadj)-value=3.75E-04, OR (unadj)=1.295, P(adj)-value=5.67E-05, OR (adj)=1.349 More... Top 68 SNPs (showing suggestive association to BD: p<0.0001)...... Top 68 SNPs (showing suggestive association to BD: p<0.0001) in our combined (CAMH and IoP) GWAS. More... Negative

SNP related genes (count: 0)

SNPs in LD with rs2813164 (count: 9) View in gBrowse (chrCHR_HSCHR1_3_CTG31:198356589..198452278 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016