SNP Report

Basic Info

Name	rs2661319 dbSNP Ensembl
Location	chr1:163069987 - 163069987(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.374002
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000367908, ENST00000367909, ENST00000421743, ENST00000491263, ENST00000527393, ENST00000527809, ENST00000531057); non_coding_transcript_variant(ENST00000491263, ENST00000527393); upstream_gene_variant(ENST00000367906, ENST00000528938, ENST00000533019)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Prata, D. P., 2006			no P-value no P-value	A chi-square analysis showed no genotype-wise or allele-wise...... A chi-square analysis showed no genotype-wise or allele-wise association for any individual SNP. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RGS4	regulator of G-protein signaling 4	1q23.3	6(3/2/1)

SNPs in LD with rs2661319 (count: 3) View in gBrowse (chr1:163063721..163069987 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2842028	upstream_gene_variant	0.806[TSI]
rs951438		0.923[CEU]; 0.93[TSI]
rs951437		0.923[CEU]; 0.93[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)