SNP Report

Basic Info
Name rs2661319 dbSNP Ensembl
Location chr1:163069987 - 163069987(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.374002
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000367908, ENST00000367909, ENST00000421743, ENST00000491263, ENST00000527393, ENST00000527809, ENST00000531057); non_coding_transcript_variant(ENST00000491263, ENST00000527393); upstream_gene_variant(ENST00000367906, ENST00000528938, ENST00000533019)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Prata, D. P., 2006 no P-value no P-value A chi-square analysis showed no genotype-wise or allele-wise...... A chi-square analysis showed no genotype-wise or allele-wise association for any individual SNP. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RGS4 regulator of G-protein signaling 4 1q23.3 6(3/2/1)

SNPs in LD with rs2661319 (count: 3) View in gBrowse (chr1:163063721..163069987 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)