BDgene

SNP Report

Basic Info
Name rs266131 dbSNP Ensembl
Location chr2:107480830 - 107480830(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.378994
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000414300); non_coding_transcript_variant(ENST00000414300)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, Y.,2010 A/G Allele association: P-value = 0.31, OR(95%CI)=0.896552(0.726...... Allele association: P-value = 0.31, OR(95%CI)=0.896552(0.726145-1.106949) More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RGS4 regulator of G-protein signaling 4 1q23.3 6(3/2/1)

SNPs in LD with rs266131 (count: 148) View in gBrowse (chr2:107396697..107539578 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 148)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016