BDgene

SNP Report

Basic Info
Name rs252952 dbSNP Ensembl
Location chr5:161287327 - 161287327(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.266374
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000274547, ENST00000393959)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/C C Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0066, Gene-wide P-value = 0.1039 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 5q34 1(1/0/0)

SNPs in LD with rs252952 (count: 6) View in gBrowse (chr5:161284971..161287789 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)