SNP Report

Basic Info

Name	rs2312147 dbSNP Ensembl
Location	chr2:57995793 - 57995793(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.285942
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000417641, ENST00000435505, ENST00000463222, ENST00000478687); non_coding_transcript_variant(ENST00000463222, ENST00000478687)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Steinberg, S.,2012		C	Association results in bipolar disorder follow-up samples(7,...... Association results in bipolar disorder follow-up samples(7,333 cases; 43,779 controls):OR(95% CI) = 1.03 (0.99, 1.07),P-value = 0.16 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
VRK2	vaccinia related kinase 2	2p16.1	1(0/1/0)

SNPs in LD with rs2312147 (count: 0) View in gBrowse (chr2:57995793..57995793 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Steinberg, S.,2012	Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.07 (1.03, 1.11),P-value = 0.00023	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 0)