SNP Report

Basic Info

Name	rs2304042 dbSNP Ensembl
Location	chr5:150265244 - 150265244(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.255192
Functional Annotation	5_prime_UTR_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000515758); intron_variant(ENST00000348628, ENST00000398376, ENST00000508662, ENST00000510347); non_coding_transcript_exon_variant(ENST00000507995); non_coding_transcript_variant(ENST00000507995, ENST00000508662)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/G		Allelic association: P-value = 0.37 Allelic association: P-value = 0.37	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CAMK2A	calcium/calmodulin-dependent protein kinase II alpha	5q32	2(1/1/0)

SNPs in LD with rs2304042 (count: 3) View in gBrowse (chr5:150258042..150265244 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs3822606	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs3776823	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs4958445	intron_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)