SNP Report

Basic Info

Name	rs2301363 dbSNP Ensembl
Location	chr9:137139979 - 137139979(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.212061
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000350902, ENST00000371546, ENST00000371550, ENST00000371553, ENST00000371555, ENST00000371559, ENST00000371560, ENST00000371561, ENST00000471122); NMD_transcript_variant(ENST00000350902); non_coding_transcript_variant(ENST00000471122)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	T/C		Allelic association: P-value = 0.17 Allelic association: P-value = 0.17	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRIN1	glutamate receptor, ionotropic, N-methyl D-aspartate 1	9q34.3	3(2/1/0)

SNPs in LD with rs2301363 (count: 1) View in gBrowse (chr9:137139979..137140083 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs2301364		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)