SNP Report

Basic Info

Name	rs2288799 dbSNP Ensembl
Location	chr5:150251850 - 150251850(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.398562
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant; splice_region_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000515758); intron_variant(ENST00000348628, ENST00000398376, ENST00000508662); non_coding_transcript_variant(ENST00000508662); splice_region_variant(ENST00000348628, ENST00000398376, ENST00000508662)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/G		Allelic association: P-value = 0.65 Allelic association: P-value = 0.65	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CAMK2A	calcium/calmodulin-dependent protein kinase II alpha	5q32	2(1/1/0)

SNPs in LD with rs2288799 (count: 2) View in gBrowse (chr5:150250120..150256510 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10463293		downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.886[CEU]; 0.868[TSI]
rs4958452		downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)