SNP Report

Basic Info

Name	rs228666 dbSNP Ensembl
Location	chr1:7808665 - 7808665(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.309704
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000377541, ENST00000451646); intron_variant(ENST00000361923, ENST00000377532, ENST00000463106, ENST00000613533, ENST00000614998); non_coding_transcript_variant(ENST00000463106)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	C/T		Allelic association: P-value = 0.18 Allelic association: P-value = 0.18	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PER3	period circadian clock 3	1p36.23	7(3/4/0)

SNPs in LD with rs228666 (count: 1) View in gBrowse (chr1:7808665..7848828 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs228652		downstream_gene_variant; intron_variant	0.939[CEU]; 0.878[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)