SNP Report

Basic Info

Name	rs2272874 dbSNP Ensembl
Location	chrCHR_HSCHR6_MHC_SSTO_CTG1:29726161 - 29726161(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.23103
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000475996); downstream_gene_variant(ENST00000259951, ENST00000334668, ENST00000376861, ENST00000429294, ENST00000434407, ENST00000444621, ENST00000462777, ENST00000482257, ENST00000484704, ENST00000485513, ENST00000486194, ENST00000489502, ENST00000606273); intron_variant(ENST00000465459); non_coding_transcript_exon_variant(ENST00000399247); non_coding_transcript_variant(ENST00000399247); upstream_gene_variant(ENST00000427340, ENST00000428990, ENST00000342322, ENST00000383515, ENST00000383516, ENST00000420414, ENST00000454646, ENST00000458026, ENST00000470816, ENST00000473966, ENST00000475107, ENST00000488237, ENST00000494169, ENST00000496799, ENST00000552082, ENST00000472371, ENST00000383511, ENST00000496199, ENST00000383511, ENST00000472371, ENST00000496199, ENST00000420026, ENST00000446846, ENST00000420067, ENST00000420923, ENST00000422711, ENST00000426470, ENST00000428296, ENST00000447400, ENST00000483651, ENST00000487648, ENST00000489795, ENST00000490333, ENST00000494850, ENST00000494940, ENST00000551832, ENST00000482336, ENST00000422960, ENST00000485297, ENST00000422960, ENST00000482336, ENST00000485297, ENST00000430582, ENST00000446955, ENST00000426675, ENST00000435058, ENST00000437020, ENST00000440590, ENST00000445657, ENST00000452916, ENST00000460067, ENST00000466921, ENST00000473159, ENST00000474636, ENST00000480742, ENST00000490304, ENST00000551780, ENST00000468678, ENST00000432068, ENST00000490259, ENST00000432068, ENST00000468678, ENST00000490259, ENST00000417214, ENST00000445800, ENST00000359076, ENST00000383626, ENST00000383627, ENST00000418017, ENST00000425139, ENST00000433515, ENST00000469777, ENST00000471983, ENST00000482008, ENST00000483860, ENST00000485463, ENST00000487856, ENST00000550932, ENST00000479154, ENST00000383625, ENST00000489167, ENST00000383625, ENST00000479154, ENST00000489167, ENST00000417904, ENST00000433438, ENST00000376848, ENST00000430472, ENST00000444057, ENST00000444891, ENST00000448064, ENST00000454779, ENST00000461939, ENST00000471304, ENST00000474650, ENST00000476710, ENST00000479217, ENST00000492175, ENST00000549422, ENST00000471952, ENST00000440776, ENST00000463731, ENST00000440776, ENST00000463731, ENST00000471952, ENST00000427673, ENST00000458419)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HLA-F	major histocompatibility complex, class I, F	6p21.3	Mapped by Literature SNP
HLA-F-AS1	HLA-F antisense RNA 1	6p22.1	1(1/0/0)
RPL23AP1	ribosomal protein L23a pseudogene 1	6p21.3	Mapped by LD-proxy

SNPs in LD with rs2272874 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_SSTO_CTG1:29726161..29726161 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)