Gene Report

Basic information

Functional annotation

Related other genetic factors

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Basic Info

Approved Symbol	HLA-F
Approved Name	major histocompatibility complex, class I, F
Location	6p21.3
Position	chr6:29722775-29738528, 1
External Links	HGNC: 4963 Entrez Gene: 3134 Ensembl: ENSG00000204642 UCSC: uc003nno.4
No. of Studies	0. Gene is from "Mapped by Literature SNP "

Gene functional annotation

Gene related GO terms (count: 0)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors

Gene related SNPs (count: 44)

Literature-origin SNPs (count: 1)

rs_ID	Location	Functional Annotation	No. of Studies (Positive/Negative/Trend)
rs1736913	chrCHR_HSCHR6_MHC_SSTO_CTG1:29734322 - 29734322(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1(1/0/0)

LD-proxies (count: 43)

rs_ID	Location	Functional Annotation
rs2072898	chrCHR_HSCHR6_MHC_SSTO_CTG1:29722649 - 29722649(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs2076177	chrCHR_HSCHR6_MHC_SSTO_CTG1:29723033 - 29723033(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs2235383	chrCHR_HSCHR6_MHC_SSTO_CTG1:29723419 - 29723419(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs2272874	chrCHR_HSCHR6_MHC_SSTO_CTG1:29726161 - 29726161(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs3736694	chrCHR_HSCHR6_MHC_SSTO_CTG1:29726765 - 29726765(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant; non_coding_transcript_exon_variant
rs7773358	chrCHR_HSCHR6_MHC_SSTO_CTG1:29731730 - 29731730(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs9258205	chrCHR_HSCHR6_MHC_SSTO_CTG1:29733745 - 29733745(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs9258207	chrCHR_HSCHR6_MHC_SSTO_CTG1:29734365 - 29734365(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs9258158	chrCHR_HSCHR6_MHC_SSTO_CTG1:29718284 - 29718284(1)	downstream_gene_variant; upstream_gene_variant
rs9258215	chrCHR_HSCHR6_MHC_SSTO_CTG1:29737237 - 29737237(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs3757324	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719230 - 29719230(1)	downstream_gene_variant; upstream_gene_variant
rs9258216	chrCHR_HSCHR6_MHC_SSTO_CTG1:29737460 - 29737460(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258170	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719693 - 29719693(1)	downstream_gene_variant; upstream_gene_variant
rs9258220	chrCHR_HSCHR6_MHC_SSTO_CTG1:29740968 - 29740968(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs2076183	chrCHR_HSCHR6_MHC_SSTO_CTG1:29721250 - 29721250(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; splice_region_variant; synonymous_variant; upstream_gene_variant
rs9258186	chrCHR_HSCHR6_MHC_SSTO_CTG1:29722281 - 29722281(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258210	chrCHR_HSCHR6_MHC_SSTO_CTG1:29735409 - 29735409(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs9258209	chrCHR_HSCHR6_MHC_SSTO_CTG1:29735332 - 29735332(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs9258213	chrCHR_HSCHR6_MHC_SSTO_CTG1:29736621 - 29736621(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258212	chrCHR_HSCHR6_MHC_SSTO_CTG1:29736156 - 29736156(1)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs7755571	chrCHR_HSCHR6_MHC_SSTO_CTG1:29731873 - 29731873(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs9258201	chrCHR_HSCHR6_MHC_SSTO_CTG1:29730953 - 29730953(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs7751815	chrCHR_HSCHR6_MHC_SSTO_CTG1:29735014 - 29735014(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs1736919	chrCHR_HSCHR6_MHC_SSTO_CTG1:29727433 - 29727433(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258206	chrCHR_HSCHR6_MHC_SSTO_CTG1:29734159 - 29734159(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs9258187	chrCHR_HSCHR6_MHC_SSTO_CTG1:29725517 - 29725517(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs3734814	chrCHR_HSCHR6_MHC_SSTO_CTG1:29724597 - 29724597(1)	downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs7753946	chrCHR_HSCHR6_MHC_SSTO_CTG1:29730454 - 29730454(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant
rs6910733	chrCHR_HSCHR6_MHC_SSTO_CTG1:29729312 - 29729312(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258174	chrCHR_HSCHR6_MHC_SSTO_CTG1:29720130 - 29720130(1)	downstream_gene_variant; upstream_gene_variant
rs9258172	chrCHR_HSCHR6_MHC_SSTO_CTG1:29720077 - 29720077(1)	downstream_gene_variant; upstream_gene_variant
rs3734813	chrCHR_HSCHR6_MHC_SSTO_CTG1:29724487 - 29724487(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs2076182	chrCHR_HSCHR6_MHC_SSTO_CTG1:29721660 - 29721660(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258169	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719635 - 29719635(1)	downstream_gene_variant; upstream_gene_variant
rs9258171	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719821 - 29719821(1)	downstream_gene_variant; upstream_gene_variant
rs9258168	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719106 - 29719106(1)	downstream_gene_variant; upstream_gene_variant
rs3757325	chrCHR_HSCHR6_MHC_SSTO_CTG1:29719305 - 29719305(1)	downstream_gene_variant; upstream_gene_variant
rs9258160	chrCHR_HSCHR6_MHC_SSTO_CTG1:29718589 - 29718589(1)	downstream_gene_variant; upstream_gene_variant
rs9258164	chrCHR_HSCHR6_MHC_SSTO_CTG1:29718972 - 29718972(1)	downstream_gene_variant; upstream_gene_variant
rs9258159	chrCHR_HSCHR6_MHC_SSTO_CTG1:29718389 - 29718389(1)	downstream_gene_variant; upstream_gene_variant
rs9258218	chrCHR_HSCHR6_MHC_SSTO_CTG1:29737954 - 29737954(1)	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant
rs9258211	chrCHR_HSCHR6_MHC_SSTO_CTG1:29736110 - 29736110(1)	3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant
rs9258208	chrCHR_HSCHR6_MHC_SSTO_CTG1:29734468 - 29734468(1)	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 0)

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Region: chr6:29722775..29738528 View in gBrowse