BDgene

SNP Report

Basic Info
Name rs2071220 dbSNP Ensembl
Location chr5:151925199 - 151925199(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.433506
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000274576, ENST00000455880, ENST00000462581, ENST00000471351)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gratacos, M.,2009 Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Recessive Model, P-value = 0.0460(corrected by genomic control, Reus), P-value = 0.0462(passed multiple testing correction, Madrid); OR(95% CI): Reus: 1.54 (1.06-2.24), Madrid: 1.55 (1.02-2.35) More... Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GLRA1 glycine receptor, alpha 1 5q33.1 1(1/0/0)

SNPs in LD with rs2071220 (count: 7) View in gBrowse (chr5:151890561..151925199 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016