SNP Report

Basic Info

Name	rs2036109 dbSNP Ensembl
Location	chr8:26759267 - 26759267(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.434305
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000380582, ENST00000380586, ENST00000519096, ENST00000519229, ENST00000521711); NMD_transcript_variant(ENST00000519096, ENST00000521711)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2008 (b)	A/C	A	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0268, Gene-wide P-value = 0.1728 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ADRA1A	adrenoceptor alpha 1A	8p21.2	2(0/2/0)

SNPs in LD with rs2036109 (count: 5) View in gBrowse (chr8:26755891..26765867 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs17055939	intron_variant; NMD_transcript_variant	0.957[CEU]
rs3739215	downstream_gene_variant; intron_variant; NMD_transcript_variant	0.848[TSI]
rs4732641	intron_variant; NMD_transcript_variant	0.958[CEU]; 1.0[TSI]
rs4236678	intron_variant; NMD_transcript_variant	0.847[TSI]
rs3802241	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant	0.81[CEU]; 0.829[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)