BDgene

SNP Report

Basic Info
Name rs2030324 dbSNP Ensembl
Location chr11:27705368 - 27705368(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.434105
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000314915, ENST00000395978, ENST00000395981, ENST00000525950, ENST00000530663, ENST00000532997); non_coding_transcript_variant(ENST00000530663); upstream_gene_variant(ENST00000356660, ENST00000395980, ENST00000395983, ENST00000418212, ENST00000420794, ENST00000438929, ENST00000530786, ENST00000530861, ENST00000533246, ENST00000584049)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Liu, L., 2008 Average PDT statistic P-value = 0.02 for the model 1; avera...... Average PDT statistic P-value = 0.02 for the model 1; average PDT statistic P-value = 0.04 for the model 2; average PDT statistic P-value = 0.16 for the model 3 between the SNP and bipolar disorder. More... this SNP provided evidence of association when the two narro...... this SNP provided evidence of association when the two narrower models of disease were employed More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BDNF brain-derived neurotrophic factor 11p14.1 37(24/12/1)

SNPs in LD with rs2030324 (count: 10) View in gBrowse (chr11:27596469..27725444 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)