BDgene

SNP Report

Basic Info
Name rs1944522 dbSNP Ensembl
Location chr11:120994213 - 120994213(1)
Variant Alleles T/A/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.41893
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.26 Allelic association: P-value = 0.26 No significant association was observed No significant association was observed Negative
Pickard, B. S., 2006 C/T P-value = 0.216 between BPD cases and controls; P-value = 0...... P-value = 0.216 between BPD cases and controls; P-value = 0.405 between all cases and controls More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIK4 glutamate receptor, ionotropic, kainate 4 11q23.3 2(1/1/0)

SNPs in LD with rs1944522 (count: 8) View in gBrowse (chr11:120994213..121008207 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Pickard, B. S., 2006 P-value = 0.842 between SCZ cases and controls; P-value = 0.405 between all cases and controls Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016