SNP Report

Basic Info

Name	rs1878399 dbSNP Ensembl
Location	chr15:78619661 - 78619661(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.268371
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000261751, ENST00000412074); intron_variant(ENST00000326828, ENST00000348639, ENST00000559658, ENST00000559941, ENST00000561128); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000559941, ENST00000561128); upstream_gene_variant(ENST00000559080)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CHRNA3	cholinergic receptor, nicotinic, alpha 3 (neuronal)	15q24	3(1/2/0)
CHRNB4	cholinergic receptor, nicotinic, beta 4 (neuronal)	15q24	2(1/1/0)

SNPs in LD with rs1878399 (count: 0) View in gBrowse (chr15:78619661..78619661 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)