SNP Report

Basic Info
Name rs1808320 dbSNP Ensembl
Location chr22:18921362 - 18921362(1)
Variant Alleles A/C/G
Minor Allele A
Minor Allele Frequence 0.26857
Functional Annotation downstream_gene_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Polyphen Annotation: possibly damaging(ENST00000334029, ENST00000357068, ENST00000420436, ENST00000610940)
SIFT Annotation: deleterious(ENST00000334029, ENST00000357068, ENST00000420436, ENST00000610940)
Consequence to Transcript downstream_gene_variant(ENST00000399694, ENST00000438924, ENST00000450579, ENST00000457083, ENST00000496625); missense_variant(ENST00000334029, ENST00000357068, ENST00000420436, ENST00000610940); non_coding_transcript_exon_variant(ENST00000313755, ENST00000429300, ENST00000446371, ENST00000482858, ENST00000491604, ENST00000609229); non_coding_transcript_variant(ENST00000313755, ENST00000429300, ENST00000446371, ENST00000482858, ENST00000491604, ENST00000609229); synonymous_variant(ENST00000334029, ENST00000357068, ENST00000420436, ENST00000610940)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Prata, D. P., 2006 no P-value no P-value A chi-square analysis showed no genotype-wise or allele-wise...... A chi-square analysis showed no genotype-wise or allele-wise association for any individual SNP. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PRODH proline dehydrogenase (oxidase) 1 22q11.2 4(0/4/0)

SNPs in LD with rs1808320 (count: 1) View in gBrowse (chr22:18920904..18921362 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)