BDgene

SNP Report

Basic Info
Name rs1805087 dbSNP Ensembl
Location chr1:236885200 - 236885200(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.218251
Functional Annotation missense_variant.
Polyphen Annotation: benign(ENST00000366576, ENST00000366577, ENST00000535889)
SIFT Annotation: tolerated(ENST00000366576, ENST00000366577, ENST00000535889)
Consequence to Transcript missense_variant(ENST00000366576, ENST00000366577, ENST00000535889)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 A/G Allelic association: P-value = 0.44 Allelic association: P-value = 0.44 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MTR 5-methyltetrahydrofolate-homocysteine methyltransferase 1q43 2(1/1/0)

SNPs in LD with rs1805087 (count: 19) View in gBrowse (chr1:236796703..236924652 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 19)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016