SNP Report

Basic Info

Name	rs1775715 dbSNP Ensembl
Location	chr10:32020077 - 32020077(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.485423
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000302418, ENST00000493889); non_coding_transcript_variant(ENST00000493889)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Goes, F. S.,2012		G	OR = 1.18,P-value(Meta) = 0.00000513 OR = 1.18,P-value(Meta) = 0.00000513	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
KIF5B	kinesin family member 5B	10p11.22	1(0/0/1)

SNPs in LD with rs1775715 (count: 66) View in gBrowse (chr10:31821979..32050864 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 66)

rs_ID	Functional Annotation	r²[population]
rs2808078	intron_variant	0.859[CHB]
rs12572072	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.906[JPT]
rs1775737		0.908[CHB]; 0.86[CHD]; 0.857[JPT]
rs11593733	downstream_gene_variant; intron_variant	1.0[CHB]; 0.976[CHD]; 0.906[JPT]
rs10827001		0.859[CHB]
rs2799034	intron_variant	0.859[CHB]
rs7095322		0.859[CHB]
rs2808096	intron_variant; missense_variant; non_coding_transcript_variant	0.804[CHB]
rs1541262	intron_variant	0.859[CHB]
rs2799017	downstream_gene_variant; intron_variant	0.859[CHB]
rs1251401		0.859[CHB]
rs11594506	intron_variant	1.0[CHB]; 0.952[CHD]; 0.906[JPT]
rs12266771		0.906[CHB]
rs2799019	intron_variant	0.856[CHB]
rs11008700		0.856[CHB]
rs2778649	intron_variant; upstream_gene_variant	0.859[CHB]
rs2808081	intron_variant	0.859[CHB]
rs2799022	intron_variant; upstream_gene_variant	0.856[CHB]
rs2799018	intron_variant; upstream_gene_variant	0.859[CHB]
rs10827003		0.908[CHB]; 0.856[CHD]; 0.895[JPT]
rs1755066	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2808079	intron_variant	0.859[CHB]
rs2808074	intron_variant	0.837[CHB]
rs3847415	upstream_gene_variant	0.859[CHB]
rs1541261	intron_variant	0.854[CHB]
rs2808105	intron_variant; non_coding_transcript_variant	0.854[CHB]
rs2799020	intron_variant	0.859[CHB]
rs1755084		0.905[CHB]; 0.809[JPT]
rs2255555	intron_variant; non_coding_transcript_variant	0.859[CHB]
rs2808091	intron_variant	0.859[CHB]
rs2778672	intron_variant; non_coding_transcript_variant	0.859[CHB]
rs2808087	intron_variant; upstream_gene_variant	0.847[CHB]
rs2808077	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	0.859[CHB]
rs1755072		0.908[CHB]; 0.862[CHD]; 0.814[JPT]
rs1419168		0.908[CHB]; 0.861[CHD]; 0.898[JPT]
rs2065443	intron_variant	0.859[CHB]
rs11008750	intron_variant	1.0[CHB]; 0.906[JPT]
rs1251363	intron_variant	1.0[CHB]; 1.0[JPT]
rs2246715	intron_variant	0.859[CHB]
rs12256714	intron_variant	0.859[CHB]
rs11595440	intron_variant	0.859[CHB]
rs2808094	intron_variant; upstream_gene_variant	0.859[CHB]
rs7895021		0.859[CHB]
rs2799025	intron_variant	0.859[CHB]
rs3847414	upstream_gene_variant	0.859[CHB]
rs11818816	intron_variant	0.859[CHB]
rs2799032	intron_variant	0.846[CHB]
rs2808104	intron_variant; non_coding_transcript_variant	0.854[CHB]
rs2808072	downstream_gene_variant; intron_variant	0.859[CHB]
rs1251386	intron_variant	1.0[CHB]; 1.0[JPT]
rs2799028	intron_variant	0.855[CHB]
rs2799033	intron_variant	0.859[CHB]
rs2808073	intron_variant	0.859[CHB]
rs2799021	synonymous_variant	0.859[CHB]
rs1251400		0.859[CHB]
rs2799009	intron_variant	0.859[CHB]
rs2808033	intron_variant	0.859[CHB]
rs2808098	intron_variant; non_coding_transcript_variant	0.859[CHB]
rs2808061	intron_variant	0.859[CHB]
rs7912121		0.859[CHB]
rs2491271	intron_variant	0.859[CHB]
rs1251355		0.908[CHB]; 0.885[CHD]; 0.951[JPT]
rs2808092	intron_variant	0.859[CHB]
rs2778669	intron_variant	0.859[CHB]
rs2808088	intron_variant; upstream_gene_variant	0.859[CHB]
rs2808100	non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant	0.889[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)