SNP Report

Basic Info

Name	rs17712679 dbSNP Ensembl
Location	chr5:150222800 - 150222800(1)
Variant Alleles	T/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.309904
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000524041); intron_variant(ENST00000348628, ENST00000351010, ENST00000398376); non_coding_transcript_variant(ENST00000351010)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/T		Allelic association: P-value = 0.34 Allelic association: P-value = 0.34	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CAMK2A	calcium/calmodulin-dependent protein kinase II alpha	5q32	2(1/1/0)
SLC6A7	solute carrier family 6 (neurotransmitter transporter), member 7	5q32	Mapped by Literature SNP

SNPs in LD with rs17712679 (count: 6) View in gBrowse (chr5:150214817..150229830 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2053053	intron_variant; non_coding_transcript_variant	0.887[CEU]
rs2053054	intron_variant; non_coding_transcript_variant	0.887[CEU]
rs6579782	intron_variant; non_coding_transcript_variant	0.917[CEU]
rs6885505	intron_variant; non_coding_transcript_variant	0.887[CEU]
rs887346	downstream_gene_variant; intron_variant	0.807[CEU]
rs9800032	downstream_gene_variant; intron_variant	0.845[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)