BDgene

SNP Report

Basic Info
Name rs17116138 dbSNP Ensembl
Location chr11:113932944 - 113932944(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0453275
Functional Annotation missense_variant.
Polyphen Annotation: benign(ENST00000260191, ENST00000537778, ENST00000543092)
SIFT Annotation: tolerated(ENST00000260191, ENST00000537778, ENST00000543092)
Consequence to Transcript missense_variant(ENST00000260191, ENST00000537778, ENST00000543092)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 A/G Allelic association: P-value = 1 Allelic association: P-value = 1 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HTR3B 5-hydroxytryptamine (serotonin) receptor 3B, ionotropic 11q23.1 2(1/1/0)

SNPs in LD with rs17116138 (count: 10) View in gBrowse (chr11:113832364..113942891 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016