SNP Report

Basic Info

Name	rs17005769 dbSNP Ensembl
Location	chr12:79661347 - 79661347(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.0898562
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000328827, ENST00000550006, ENST00000551712); non_coding_transcript_variant(ENST00000550006)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kishi, T., 2008 (a)	G > A		Hardy-Weinberg equilibrium P value=0.441, genotypic P value=...... Hardy-Weinberg equilibrium P value=0.441, genotypic P value=0.121, allelic P value=0.205 for bipolor disorder compared with controls. More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PAWR	PRKC, apoptosis, WT1, regulator	12q21.2	1(0/1/0)

SNPs in LD with rs17005769 (count: 0) View in gBrowse (chr12:79661347..79661347 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Kishi, T., 2008 (a)	Hardy-Weinberg equilibrium P value=0.125, genotypic P value=0.254, allelic P value=0.414 for schizophrenia compared with controls.	No association was detected with schizophrenia or MDD in allele/genotype-wise analyses.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Kishi, T., 2008 (a)	Hardy-Weinberg equilibrium P value=0.313, genotypic P value=0.21, allelic P value=0.261 for MDD compared with controls.	No association was detected with schizophrenia or MDD in allele/genotype-wise analyses.	Negative