BDgene

SNP Report

Basic Info
Name rs16961283 dbSNP Ensembl
Location chr15:48636598 - 48636598(1)
Variant Alleles C/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.158946
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000560355); intron_variant(ENST00000316623, ENST00000537463, LRG_778t1); NMD_transcript_variant(ENST00000537463)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 G/C P-value=6.33E-05 P-value=6.33E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FBN1 fibrillin 1 15q21.1 2(0/2/0)

SNPs in LD with rs16961283 (count: 11) View in gBrowse (chr15:48472745..48642803 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016