BDgene

SNP Report

Basic Info
Name rs16911839 dbSNP Ensembl
Location chr11:12941575 - 12941575(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.0109824
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000526600); downstream_gene_variant(ENST00000334310, ENST00000527575, ENST00000527636)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 C/G P-value=8.19E-05 P-value=8.19E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 11p15.4 1(0/1/0)

SNPs in LD with rs16911839 (count: 0) View in gBrowse (chr11:12941575..12941575 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)