BDgene

SNP Report

Basic Info
Name rs1680005 dbSNP Ensembl
Location chr6:37206969 - 37206969(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.309704
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Goes, F. S.,2012 A OR = 1.18,P-value(Meta) = 0.00000745 OR = 1.18,P-value(Meta) = 0.00000745 Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TMEM217 transmembrane protein 217 6p21.31-p21.2 1(0/0/1)

SNPs in LD with rs1680005 (count: 7) View in gBrowse (chr6:37205158..37212579 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)