BDgene

SNP Report

Basic Info
Name rs1601012 dbSNP Ensembl
Location chr12:51685722 - 51685722(1)
Variant Alleles A/C
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.356829
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000354534, ENST00000355133, ENST00000545061, ENST00000550891, ENST00000599343, ENST00000627620, ENST00000637709); NMD_transcript_variant(ENST00000637709); non_coding_transcript_variant(ENST00000550891); upstream_gene_variant(ENST00000551216)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Wang, Y., 2008 C/A Allelic P-value = 0.0178, permutated P-value = 0.0523; geno...... Allelic P-value = 0.0178, permutated P-value = 0.0523; genotypic P-value = 0.0227 More... This SNP showed statistically significant differences betwee...... This SNP showed statistically significant differences between bipolar patients and controls in both allele and genotype distribution. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SCN8A sodium channel, voltage gated, type VIII alpha subunit 12q13.1 1(1/0/0)

SNPs in LD with rs1601012 (count: 15) View in gBrowse (chr12:51633641..51685722 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016