BDgene

SNP Report

Basic Info
Name rs149826123 dbSNP Ensembl
Location chr17:3292483 - 3292483(1)
Variant Alleles A/G/T
Minor Allele T
Minor Allele Frequence 0.00179712
Functional Annotation intron_variant; missense_variant; non_coding_transcript_variant.
Polyphen Annotation: possibly damaging(ENST00000323404' target='_blank'>ENST00000323404, ENST00000615105' target='_blank'>ENST00000615105); benign(ENST00000323404' target='_blank'>ENST00000323404, ENST00000615105' target='_blank'>ENST00000615105)
SIFT Annotation: deleterious(ENST00000323404, ENST00000615105)
Consequence to Transcript intron_variant(ENST00000573491, ENST00000573901, ENST00000576166); missense_variant(ENST00000323404, ENST00000615105, ENST00000323404, ENST00000615105); non_coding_transcript_variant(ENST00000573491, ENST00000573901, ENST00000576166)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Georgi, B., 2014 A/T 7 in BPI, 6 in Well 7 in BPI, 6 in Well Top 30 Amish-specific putative damaging exonic missense vari...... Top 30 Amish-specific putative damaging exonic missense variants by prevalence in affected individuals. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
OR3A1 olfactory receptor, family 3, subfamily A, member 1 17p13.3 1(0/0/1)

SNPs in LD with rs149826123 (count: 0) View in gBrowse (chr17:3292483..3292483 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)