BDgene

SNP Report

Basic Info
Name rs1414686 dbSNP Ensembl
Location chr10:54651899 - 54651899(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0848642
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000320301, ENST00000361849, ENST00000373955, ENST00000373956, ENST00000373957, ENST00000373965, ENST00000395430, ENST00000395432, ENST00000395433, ENST00000395438, ENST00000395440, ENST00000395442, ENST00000395445, ENST00000395446, ENST00000409834, ENST00000414367, ENST00000414778, ENST00000422842, ENST00000437009, ENST00000448885, ENST00000458638, ENST00000495484, ENST00000612394, ENST00000613346, ENST00000613657, ENST00000614895, ENST00000616114, ENST00000617051, ENST00000617271, ENST00000621708, ENST00000622048); NMD_transcript_variant(ENST00000373956, ENST00000414367, ENST00000448885); non_coding_transcript_variant(ENST00000422842)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.00539, Genotypic P-value = 0.01...... In GWAS: Allelic P-value = 0.00539, Genotypic P-value = 0.01429, Recessive P-value = 0.01296, HWE P-value = 0.93162; in Follow-up study: MAF=0.17, Allelic P-value = 0.0062, Allelic Q-value=0.49274, HWE P-value = 0.24396 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PCDH15 protocadherin-related 15 10q21.1 4(2/1/1)

SNPs in LD with rs1414686 (count: 6) View in gBrowse (chr10:54651220..54653644 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016